In the year Cosmic Era 0071, a wartime brawl between two mobile suits results in the destruction of a neutral country. Shinn Asuka finds his entire family killed as casualties of the violence, and swears his life toward a vengeful pursuit of the Earth's Natural forces, under the impression they were the ones responsible for his family's death. Shinn works his way up through the ZAFT military forces, eventually gaining access to the cockpit of the prototype Impulse mobile suit. Athrun Zala, a veteran of the recent war employed in the service of diplomat Cagalli Yula Athha, finds himself drawn into a new conflict between the Naturals and the Coordinators: human beings artificially enhanced before birth and hated by the Naturals for their biological advantages. As the new war rears its head and violence becomes inevitable, Athrun finds himself as a mentor to the bitter Shinn. Athrun must steer the young pilot towards a mindset of mercy before his rage and desire for vengeance consumes him. [Written by MAL Rewrite]

In the year Universal Century 0096, three years after Char Aznable's failed attempt to force human migration into space, life continues in the colonies orbiting Earth. One such colony, at Side 4, is home to Banagher Links, a 16-year-old who lives a quiet life among his classmates. Audrey Burne, the last descendant of a great tyrannical family, takes it upon herself to steal the key to a mysterious device known as "Laplace's Box." It is said that the Box has the power to shape the course of the universe, and Audrey travels to Side 4 in an attempt to take it from its current holder and keep it from the Sleeves, the surviving remnant of Char Aznable's Neo-Zeon. In her search, she stumbles across Banagher and changes his life forever. When Side 4 comes under the attack of the Sleeves and its prolific fighters Marida Cruz and Full Frontal, Banagher takes control of the newly built Gundam Unicorn to defend his friends and protect the fate of humankind. [Written by MAL Rewrite]

By the year 0096 of the Universal Century, a fragile peace emerges from the ashes of conflict. Sixteen-year-old student Banagher Links visits the Industrial 7 space colony on a school field trip, but because of a broken shuttle, he is left completely stranded. To Banagher, who has always lived a normal life, war had always been a distant, almost mythical part of history; but within minutes, fantasy becomes reality when he rescues a girl named Audrey Burne, who urgently needs to meet with the leader of the nearby Vist Foundation, Cardeas Vist. She hopes to persuade him to withhold the "Laplace's Box," an object that holds the potential to destroy the world. History is set in motion as galactic forces converge on Industrial 7, each vying for possession of the Laplace's Box. As Neo Zeon remnants clash with Earth Federation Forces around the colony, Cardeas, in his final moments, gives Banagher the key to the Box, a mobile suit dubbed "The Unicorn Gundam." Packed with explosive action and rising tension, Mobile Suit Gundam Unicorn RE:0096 follows Banagher as his conviction is tested and the destiny that has laid dormant for more than a century is finally realized. [Written by MAL Rewrite]

Over three hundred years have passed since the Calamity War, the great conflict between Earth and its outer space colonies. Now Earth is ruled over by four economic blocs, and the military organization Gjallarhorn is responsible for keeping the peace. Mars, on the other hand, depends heavily on Earth's economy. Horrified by the appalling living conditions that Mars' inhabitants have to bear, Kudelia Aina Bernstein, a young aristocrat from the Chryse Autonomous Region, gets involved in the Red Planet's independence movement. She hires the services of a local company, Chryse Guard Security (CGS), to escort her on the journey to Earth to negotiate economic conditions with the earthly bloc that controls the region. The Third Army Division—consisting of Mikazuki Augus, Orga Itsuka, and many other child soldiers—are chosen to protect her. When Gjallarhorn attacks the CGS facilities to assassinate the young revolutionary threatening their interests, Orga and his comrades must not let the attackers accomplish their goal—in fact, Gjallarhorn's actions might turn out to be the unintentional catalyst that leads the children to be the forgers of their own destiny. [Written by MAL Rewrite]