Conan Edogawa, the Detective Boys, and Professor Hiroshi Agasa decide to visit the Nishitamashi Twin Towers. There they run into Ran Mouri; her closest friend, Sonoko Suzuki, and Ran's father, the famous Kogorou Mouri. Learning the trio are attending the towers' grand opening, Conan and company tag along for a private tour of its floors.

However, as preparations are finalized for the opening ceremony, their visit takes an unexpected turn—three brutal murders occur, seemingly linked to a mysterious Porsche 356A. Soon after, as Conan and the detectives dive deeper into the case, the towers are rocked by an explosion. With fire rapidly spreading and lives in danger, police desperately seek to evacuate everyone. But when the elevator, their only means to escape goes down, Conan and company are left behind. With help on its way, they frantically try to keep everyone safe, but time is running out if they want to bring the perpetrators to justice.

[Written by MAL Rewrite]

Noah's Ark—the latest in VR technology and a milestone of human innovation—is set for a showcase to Japan's privileged children. They have the honour of beginning a new revolution in gaming; however, their carefree fun is cut short when a company employee is found murdered, with his dying message pointing to a clue hidden within the Ark.

Along with the Detective Boys and Ran Mouri, Conan Edogawa enters Noah's Ark to solve this mystery and ensure the perpetrator is caught. But once they're inside the Ark, it takes on a mind of its own, imprisoning them and the children within its worlds. To escape and bring the murderer to justice, Conan and company must navigate a simulated 19th century London and track down the infamous Jack the Ripper—with the lives of 50 innocent children depending on them.

[Written by MAL Rewrite]

Under the cover of darkness, a masked samurai murders six men across the metropolis of Japan: three in Tokyo, one in Osaka, and the last in Kyoto. In their investigation, the police learn that each man was a member of the Genjibotaru—a thieves gang centered on the theft of Buddhist statues and artifacts and who go by the names of Minomoto no Yoshitune's servants.

Without a clear motive or clues to the other members' identities, the case runs dry until a Kyoto temple calls for the famous Kogorou Mouri. Having received an anonymous letter containing a peculiar puzzle, the temple monks ask for his assistance in solving it to recover their long lost statue. Meanwhile, Conan Edogawa and high school detective Heiji Hattori team up in order to solve the cryptic puzzle and find the murderer, as Hattori searches for his childhood love.

With Hattori's knowledge of Kyoto, the two scour the streets and gradually discover the truth, but not before the murderer strikes again—killing another Genjibotaru member and, after repeated attempts on Hattori's life, eventually kidnapping Hattori's childhood sweetheart. It is only by working together to bring buried clues to light can Conan and Hattori hope to end the rogue samurai's bloodshed and save Hattori's love.

[Written by MAL Rewrite]

Fifteen years ago in a barren stretch of the Pacific, a cruise ship collided with an iceberg and was lost at sea. More than a decade later, Hideto Yashiro—a ship engineer—died in a fatal car accident. The unlikely connection between these events only comes to light on the luxury liner St. Aphrodite during her maiden voyage.

Aboard it on a much needed vacation, Kogorou Mouri, his daughter Ran, Conan Edogawa, and the Detective Boys enjoy a trip provided by Sonoko Suzuki's family. But their fun is soon cut short when a game of hide-and-seek leads to Sonoko's disappearance. Some time later, the CEO of the Yashiro group, who built the St. Aphrodite, is found stabbed to death and her father missing. While the police's investigation turns to a dead end, Conan closes in on the culprit. Unwilling to be apprehended, the culprit threatens to blow up the St. Aphrodite and sink all her passengers.

As the ship's hull rapidly fills with water, the truth behind the vengeful murders is finally revealed. With no place to escape, Conan and Kogorou must wrestle with the elusive culprit before everyone on board is dragged to the ocean floor.

[Written by MAL Rewrite]