In an Edo-era Japan lush with a variety of sword-fighting styles, Shichika Yasuri practices the most unique one: Kyotouryuu, a technique in which the user's own body is wielded as a blade. The enigmatic seventh head of the Kyotouryuu school, Shichika lives quietly in exile with his sister Nanami until one day—the wildly ambitious strategist Togame barges into their lives. Togame brazenly requests that Shichika help in her mission to collect twelve unique swords, known as the "Deviant Blades," for the shogunate. Shichika accepts, interested in the girl herself rather than petty politics, and thus sets out on a journey. Standing in their way are the fierce wielders of these legendary weapons as well as other power-hungry entities who seek to thwart Togame's objective. In order to prevail against their enemies, the duo must become an unbreakable team as they forge ahead on a path of uncertainty and peril. [Written by MAL Rewrite]

Rokurou "Rock" Okajima has joined the Lagoon Company, a pirate mercenary group which operates out of Roanapur, Thailand. Despite his initial protests, this filthy slum of depraved souls and merciless criminals now serves as the former salaryman's home. Stranded, with nothing left of his past life but the clothes on his back and his inner morality, Rock is forced to perform jobs alongside the other members of the Lagoon crew. Berated for his lack of spine as he wades through the underbelly of society, he must decide whether to continue on amidst the gunfire and ruthlessness or risk everything he has in an attempt to be free. Whether he chooses the comfort of a familiar land or the freedom of being an outlaw, his decision will have lasting consequences on the crew who gave him a home.

The discovery of a hypergate on the Moon once allowed the human race to teleport to Mars. Those who chose to settle there unearthed a technology far more advanced than that of their home planet, which they named "Aldnoah." This discovery led to the founding of the Vers Empire of Mars and a declaration of war against the "Terrans," those who stayed behind on Earth. However, a battle on the moon—later called "Heaven's Fall"—caused the hypergate to explode, destroying the moon and leading the two planets to establish an uneasy ceasefire. Their peace was a fragile one, however. Fifteen years later, high school student Inaho Kaizuka witnesses the plotted assassination of the Vers Empire's Princess Asseylum Vers Allusia, who had come to Earth in hopes of repairing the relationship between the empire and its homeland. The ceasefire is shattered, and the Martians declare war on the Terrans once again. In the face of this insurmountable enemy, Inaho and his friends must now fight against the Vers Empire to settle the war once and for all. [Written by MAL Rewrite]

Narumi Katou is a middle-aged man who suffers from the bizarre ZONAPHA Syndrome: a rare and inexplicable disease that causes its victims to endure severe seizures at random, with the only cure being to watch someone laugh. One day, during Narumi's part time job, a young boy with a giant suitcase fleeing from three adults runs into him. The boy introduces himself as Masaru Saiga, the new owner of the famous Saiga Enterprises following his father's recent death. However, other members of his family are trying to assassinate him and claim the fortune for themselves. Determined to save the child, Narumi helps Masaru escape and ends up fighting the pursuers, only to discover that they are sentient humanoid puppets with superhuman strength. As Narumi is about to lose, a white-haired girl suddenly joins the fray and swiftly summons yet another puppet from the boy's suitcase, claiming herself to be Shirogane, Masaru's guardian. Karakuri Circus follows three people from different backgrounds whose fates intertwine and diverge as they unravel the mysteries of an ancient tale of love and betrayal, and the long, ancient battle between humans and puppets. [Written by MAL Rewrite]