Nine regular humans from different parts of the world are abducted and transformed into cyborgs with astounding powers for the purpose of being used as weapons. The nine cyborgs rebel and start to fight against their creators in the name of justice and world peace. Decades later, the nine cyborgs seem to be untouched by time, but they live in a world where "justice" has as many nuances as the number of people living on the planet. What is their place in the world now? "In the beginning was the Voice, and the word was Him; and all obeyed His word in great awe. But those who dwelt upon the land, through vanity, cunning and greed, attempted to build a multitude of towers whose tops reached unto heaven, and accumulated great wealth on earth. Scattering across the land and laying it to waste, man turned a deaf ear to His Voice. So He gave unto man an opportunity to atone for his misdeeds; and flame and smoke and the roar of a lion descended upon earth; and shattered the many towers to dust...."

Two pairs of young lovers become embroiled in a war between two rival kingdoms, the primitive but resplendent Isa and the militaristic but undisciplined Paro. Izu and his young wife, Marin, are simple farmers who live in the unassuming village of Saki, which lies directly between Isa and Paro. While Saki does not have the beauty of Isa nor the war machines of Paro, they do possess a magnificent tree known as "Windaria," to which the villagers give their prayers in return for "good memories." When the war erupts, Izu decides to join Paro's army, enthralled by the fantastic motorbike "given" to him as a bribe. Before he departs, they each take a vow: He will definitely return to her, and until he does, she will wait for him. The other two lovers are Jill, the prince of Paro, and Ahanas, Princess of Isa. They initially want nothing to do with the rapidly escalating conflict, but after Jill's father, Paro's king, dies by his son's hand in an altercation over the war, Jill has little choice but to realize his father's final wish: the taking of Isa. The only problem is that he had promised his beloved, Ahanas, that he would not become involved. Windaria is a war parable set in a fantasy land of unicorns and ghost ships.

Ryu, the current Street Fighter champion, must overcome the power of the "Dark Hadou" which consumed Akuma, the brother of his sensei, Gouken. Plus, he deals with the unexpected arrival of Shun, a young boy who proclaims to be his long-lost brother.

Announced at the "Pretty Rhythm Christmas -Prism Stage- Event," the movie will compile Prism Show scenes from all three seasons. Residents of the Prism World Momo and Penguin-sensei work together to introduce various Prism Shows throughout the history of Aurora Dream, Dear My Future, and Rainbow Live. Within the many Prism Shows performed by Aira, Mia, Naru and their friends, only ten rank on top.